intro-to-mrtools

Setup

1. Familiarise yourself with the data files (what’s what?)
2. Set up folder structure (using the date in YYYYMMDD format in folder name will help you keep track of sessions / experiments)
3. Move files to the appropriate places:

20200721_demo/
├── Anatomy
│   ├── dafni_01_FSL_3_1.nii
│   └── dafni_01_FSL_7_1.nii
├── Etc
│   ├── Readme.md
│   ├── dafni_01_FSL_2_1.nii
│   └── times.dlm
└── Raw
    └── TSeries
        ├── dafni_01_FSL_4_1.nii
        ├── dafni_01_FSL_5_1.nii
        └── dafni_01_FSL_6_1.nii

1. run mrInit and enter additional info / metadata.

Notes

• a commonly used package manager on macOS is brew - https://brew.sh/ – same idea as apt-get on linux.